Download DualSeqDB data

This file contains all Dual-Sequencing Database entries, as described in the About section.

DualSeqDB version 1 (2020-08)

• dualseqdb_v1.zip (47.4 MB, contains a 236.2 MB tab-separated text file)

  This table contains more than 300,000 entries, each corresponding to a bacterial or host gene whose expression level was determined during infection using Dual-Seq.

  Each row includes:

  • A semi-stable unique internal identifier (or "DualID") ,
  • Pathogen name ,
  • Pathogen NCIB taxon ID ,
  • Host name ,
  • Host NCBI taxon ID ,
  • Organism ,
  • Tissue infected ,
  • GenBank Locus Tag ,
  • GenBank Protein ID ,
  • UniProt accession (where available) ,
  • Gene symbol (where available) ,
  • Time post infection ,
  • Description of the gene product (protein) ,
  • A log2 expression fold change ,
  • A p-value ,
  • PubMed ID of the original study ,
  • Protein sequence .

  For information on how the expression fold change values were obtained, please see the About tab.

Our own work is licenced under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International Licence . Please also see the CRG's legal notice.